CIPRO 2.5 : Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality

Endo Toshinori; Ueno Keisuke; Yonezawa Kouki; Mineta Katsuhiko; Hotta Kohji; Satou Yutaka; Yamada Lixy; Ogasawara Michio; Takahashi Hiroki; Nakajima Ayako; Nakachi Mia; Nomura Mamoru; Yaguchi Junko; Sasakura Yasunori; Yamasaki Chisato; Sera Miho; Yoshizawa Akiyasu C.; Imanishi Tadashi; Taniguchi Hisaaki; Inaba Kazuo

タイトル	en CIPRO 2.5 : Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality
作成者	en Endo, Toshinori NRID 1000000323692 en Ueno, Keisuke NRID 1000090435983 en Yonezawa, Kouki en Mineta, Katsuhiko NRID 1000040374615 en Hotta, Kohji NRID 1000080407147 en Satou, Yutaka NRID 1000040314174 en Yamada, Lixy en Ogasawara, Michio NRID 1000000343088 en Takahashi, Hiroki NRID 1000040283585 en Nakajima, Ayako en Nakachi, Mia en Nomura, Mamoru en Yaguchi, Junko en Sasakura, Yasunori NRID 1000010400649 en Yamasaki, Chisato en Sera, Miho en Yoshizawa, Akiyasu C. en Imanishi, Tadashi en Taniguchi, Hisaaki NRID 1000010257636 en Inaba, Kazuo NRID 1000080221779
アクセス権	open access
主題	NDC 467
内容注記	Abstract en The Ciona intestinalis protein database (CIPRO) is an integrated protein database for the tunicate species C. intestinalis. The database is unique in two respects: first, because of its phylogenetic position, Ciona is suitable model for understanding vertebrate evolution; and second, the database includes original large-scale transcriptomic and proteomic data. Ciona intestinalis has also been a favorite of developmental biologists. Therefore, large amounts of data exist on its development and morphology, along with a recent genome sequence and gene expression data. The CIPRO database is aimed at collecting those published data as well as providing unique information from unpublished experimental data, such as 3D expression profiling, 2D-PAGE and mass spectrometry-based large-scale analyses at various developmental stages, curated annotation data and various bioinformatic data, to facilitate research in diverse areas, including developmental, comparative and evolutionary biology. For medical and evolutionary research, homologs in humans and major model organisms are intentionally included. The current database is based on a recently developed KH model containing 36 034 unique sequences, but for higher usability it covers 89 683 all known and predicted proteins from all gene models for this species. Of these sequences, more than 10 000 proteins have been manually annotated. Furthermore, to establish a community-supported protein database, these annotations are open to evaluation by users through the CIPRO website. CIPRO 2.5 is freely accessible at http://cipro.ibio.jp/2.5.
出版者	en Oxford University Press
日付	Issued2011-01
言語	eng
資源タイプ	journal article
出版タイプ	VoR
資源識別子	HDL http://hdl.handle.net/2115/45023
関連	isIdenticalTo DOI https://doi.org/10.1093/nar/gkq1144
収録誌情報	PISSN 0305-1048 en Nucleic Acids Research 巻39 号1 開始ページD807 終了ページD814
ファイル	fulltext NAR39-s1_D807-D814.pdf 2.67 MB (application/pdf) Issued2011-01
コンテンツ更新日時	2023-07-26