CIPRO 2.5 : Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality

Endo Toshinori; Ueno Keisuke; Yonezawa Kouki; Mineta Katsuhiko; Hotta Kohji; Satou Yutaka; Yamada Lixy; Ogasawara Michio; Takahashi Hiroki; Nakajima Ayako; Nakachi Mia; Nomura Mamoru; Yaguchi Junko; Sasakura Yasunori; Yamasaki Chisato; Sera Miho; Yoshizawa Akiyasu C.; Imanishi Tadashi; Taniguchi Hisaaki; Inaba Kazuo

Title	en CIPRO 2.5 : Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality
Creator	en Endo, Toshinori NRID 1000000323692 en Ueno, Keisuke NRID 1000090435983 en Yonezawa, Kouki en Mineta, Katsuhiko NRID 1000040374615 en Hotta, Kohji NRID 1000080407147 en Satou, Yutaka NRID 1000040314174 en Yamada, Lixy en Ogasawara, Michio NRID 1000000343088 en Takahashi, Hiroki NRID 1000040283585 en Nakajima, Ayako en Nakachi, Mia en Nomura, Mamoru en Yaguchi, Junko en Sasakura, Yasunori NRID 1000010400649 en Yamasaki, Chisato en Sera, Miho en Yoshizawa, Akiyasu C. en Imanishi, Tadashi en Taniguchi, Hisaaki NRID 1000010257636 en Inaba, Kazuo NRID 1000080221779
Accessrights	open access
Subject	NDC 467
Description	Abstract en The Ciona intestinalis protein database (CIPRO) is an integrated protein database for the tunicate species C. intestinalis. The database is unique in two respects: first, because of its phylogenetic position, Ciona is suitable model for understanding vertebrate evolution; and second, the database includes original large-scale transcriptomic and proteomic data. Ciona intestinalis has also been a favorite of developmental biologists. Therefore, large amounts of data exist on its development and morphology, along with a recent genome sequence and gene expression data. The CIPRO database is aimed at collecting those published data as well as providing unique information from unpublished experimental data, such as 3D expression profiling, 2D-PAGE and mass spectrometry-based large-scale analyses at various developmental stages, curated annotation data and various bioinformatic data, to facilitate research in diverse areas, including developmental, comparative and evolutionary biology. For medical and evolutionary research, homologs in humans and major model organisms are intentionally included. The current database is based on a recently developed KH model containing 36 034 unique sequences, but for higher usability it covers 89 683 all known and predicted proteins from all gene models for this species. Of these sequences, more than 10 000 proteins have been manually annotated. Furthermore, to establish a community-supported protein database, these annotations are open to evaluation by users through the CIPRO website. CIPRO 2.5 is freely accessible at http://cipro.ibio.jp/2.5.
Publisher	en Oxford University Press
Date	Issued2011-01
Language	eng
Resource Type	journal article
Version Type	VoR
Identifier	HDL http://hdl.handle.net/2115/45023
Relation	isIdenticalTo DOI https://doi.org/10.1093/nar/gkq1144
Journal	PISSN 0305-1048 en Nucleic Acids Research Volume Number39 Issue Number1 Page StartD807 Page EndD814
File	fulltext NAR39-s1_D807-D814.pdf 2.67 MB (application/pdf) Issued2011-01
Oaidate	2023-07-26